Martian Successor Nadesico: The Motion Picture - Prince of Darkness (1998) on Netflix

Plot summary

An uneasy peace holds between Earth and the Jovian Federation two years after the third battle of Mars, and the Nadesico holds the Ruin. Akito Tenkawa and Yurika Misumaru have vanished and are believed dead. Ruri Hoshino, still a teenager, commands the Nadesico B and is respected in the military for her skill with machines. The Martian Successors, a splinter of the old Jovian Federation, launch an offensive to restart the war and take revenge on Earth and Nergal. The Nadesico's former crew is recalled for an unsanctioned mission, alongside two newcomers: Ensign Hari Makibi, a genetically engineered prodigy like Ruri, and Saburota Takasugi, a former Jovian officer.